Introduction of species is a major driver of global change and loss of biodiversity in ecosystems. The Mediterranean Sea is the most heavily invaded region in the world by introduced seaweeds. The fan mussel Pinna nobilis is the largest Mediterranean bivalve, and a protected species, present at depths from 0.5 m to 60 m. In Cabrera National Park marine protected area (MPA) (Balearic Islands, north-western Mediterranean) the population of P. nobilis is affected by the invasive seaweeds Lophocladia lallemandii and Caulerpa racemosa; however the extent of this colonization on the bivalve is unknown. Therefore, the main aims of the present study were to: (1) determine the extent of invasion of L. lallemandii and C. racemosa on the P. nobilis population; and (2) test if this invasion showed differences with depth. This is the first study assessing invasion by seaweeds on a large bivalve in a high density P. nobilis population. Pinna nobilis was distributed in all seagrass meadows surveyed within the MPA; we found a total of 872 live P. nobilis individuals, 449 and 423 of which were found at 10 and 20 m depth, respectively. High cover of L. lallemandii and low presence of C. racemosa were detected in the P. nobilis population, being quantified in 49.37% and 1.38% of the population of P. nobilis, respectively. Bathymetric differences on Lophocladia epizoism over P. nobilis has been recorded in this study; with increasing values of L. lallemandii cover index, biomass and volume at deeper depths. Pinna nobilis could be a preferential substratum for L. lallemandii in Posidonia oceanica meadows in deeper waters, acting as a stepping-stone for invasive seaweeds and facilitating the invasion throughout seagrass meadows.

Submerged artificial surface imitates newly available habitat for settlement of marine fauna. It also enables study of the timing of benthic larval settlement. Such knowledge is important if the model of possible recovery after disturbance in protected areas is to be assessed. During this study recruitment of sessile benthic invertebrate fauna at spatial and temporal scales was investigated using artificial panels submerged in the Skomer Marine Nature Reserve (Wales, UK). Panels were exchanged monthly between May 2009 and September 2011 (with the exclusion of winter time). Recruitment was highly variable with regard to time and distribution; abundance and number of recruiting species varied significantly between sites (about 2 km apart from each other), depths (6 and 12 m), position on panels (top or underside) and years without any obvious trends. The highest number of individuals and highest values of species richness were at Bernies Rocks, at the greater depth and on the underside surface of panels. Bryozoans were the dominant taxon on panels in each studied year and month. Most macrofaunal species noted on panels exhibit a colonial life strategy with short-lived, non-feeding larval stage. Although many species settle all year round, levels of settlement usually peak in summer months, showing a seasonal recruitment pattern (Bugula fulva, Spirobranchus triqueter, Chorizopora brongniarti and Escharoides coccinea). Some species had a pronounced settlement peak in spring (e.g. Electra pilosa and Balanus crenatus).

This study aimed to determine the potential impact of an oil spill on intertidal meiofauna at a clean, sandy beach in Korea. This objective was accomplished by examining changes in the structure of meiofaunal assemblages after a controlled oil spill of different concentrations on the beach. The concentration of total petroleum hydrocabon (TPH) in the experimental plots after oil application was expectedly higher for the first 4 d compared to before oil application. The TPH concentrations decreased at a faster rate in the first 4 d, and then progressively. The sharp decline in meiofaunal density in the experimental plots during the first 4 d after the spill might be attributed to the short-term toxic effects of the oil. This suggestion is supported by a significant negative interaction of the TPH on meiofaunal density during the study period. The period of low density of meiofauna also coincided with the maximum concentration of TPH in the sediment. The multivariate indices proved to be highly efficient, showing that samples contaminated with oil had high TPH concentrations, and were partially separated in terms of meiofaunal communities from samples before oil application or samples with low TPH concentrations. The structure of the meiofaunal communities in the experimental plots was similar before and 1 month after oil application. However, the density of meiofauna sharply decreased immediately after oil application in the experiment plots. Furthermore, the meiofaunal density recovered slowly as time passed.

Shade plots, simple visual representations of abundance matrices from multivariate species assemblage studies, are shown to be an effective aid in choosing an overall transformation (or other pre-treatment) of quantitative data for long-term use, striking an appropriate balance between dominant and less abundant taxa in ensuing resemblance-based multivariate analyses. Though the exposition is entirely general and applicable to all community studies, detailed illustrations of the comparative power and interpretative possibilities of shade plots are given in the case of two estuarine assemblage studies in south-western Australia: (a) macrobenthos in the upper Swan Estuary over a two-year period covering a highly significant precipitation event for the Perth area; and (b) a wide-scale spatial study of the nearshore fish fauna from five divergent estuaries. The utility of transformations of intermediate severity is again demonstrated and, with greater novelty, the potential importance seen of further mild transformation of all data after differential down-weighting (dispersion weighting) of spatially ‘clumped’ or ‘schooled’ species. Among the new techniques utilized is a two-way form of the RELATE test, which demonstrates linking of assemblage structure (fish) to continuous environmental variables (water quality), having removed a categorical factor (estuary differences). Re-orderings of sample and species axes in the associated shade plots are seen to provide transparent explanations at the species level for such continuous multivariate patterns.

Concentrations of cadmium (Cd), lead (Pb), copper (Cu), zinc (Zn) and iron (Fe) were measured in three macroalgal species, Codium simulans, Sargassum sinicola and Gracilaria pachydermatica, and in the sea slug Elysia diomedea, living in marine ecosystems dominated by Sargassum species and located near exploited phosphorite deposits. Metal concentrations in macroalgae and sea slugs were significantly different among sites. The highest concentrations of Cd recorded in C. simulans and S. sinicola, as well as in E. diomedea were recorded at the site closest to the phosphorite deposit. In general, Cd and Zn concentrations in E. diomedea were higher than those recorded in specimens of C. simulans, S. sinicola and G. pachydermatica. In contrast, Pb, Cu, and Fe concentrations in E. diomedea were lower than or similar to those in macroalgae from all sampled sites. The information generated contributes to the knowledge about potential mobility and metal bioaccumulation at lower trophic levels in marine eco systems.

Benthic habitat and epibenthic megafauna are described from seabed photographs taken in or near three potential deep-water Marine Protected Areas on the Hebridean Slope, surveyed in 1988, 1995–96 and 1998. Broad bathymetric zones are defined by visible substratum characteristics, and by cluster analysis using presence/absence of identified fauna. The shelf edge and upper slope (to 350 m depth) showed current-swept coarse substrata with a very sparse fauna. A transition to finer sandy sediments was apparent at 350–470 m, with a greater abundance of mobile epifauna. The brittlestar Ophiocten gracilis occurred at high density below 600 m depth in all three areas. Southern stations indicated an abrupt lower boundary for this zone at ca 1000 m. In the north, rippled sands with xenophyophores occurred below the O. gracilis zone at 1000–1100 m. Xenophyophores were also seen in smaller numbers at this depth in the south. From ~1300–1600 m a seabed of burrowed fine mud was recorded in both northern and southern areas. Bioturbated sediments on the Rockall Trough floor at ~2060 m supported more visible epifauna, principally the brittlestar Ophiomusium lymani and the octocoral Acanella arbuscula. The bathymetric pattern differs from a scheme proposed in 2010 for the deep north-east Atlantic in the lack of any obvious zonal boundary at 750 m. No cold-water corals or sponge aggregations were observed. Trawl marks were observed in all three areas, particularly in the 1998 northern survey, with highest frequency at 1300–1400 m.

This study evaluated the decomposition process of leaf litter from the main Brazilian mangrove species Avicennia schaueriana, Laguncularia racemosa and Rhizophora mangle. Senescent leaves were collected, dried and placed in nylon bags with different mesh sizes (fine: 2 × 2 mm and coarse: 8 × 8 mm). The bags were distributed over the sediment, and replicates of each species and mesh size were collected periodically over 4 months. In the laboratory, the dry weight of the samples was measured, and the decomposition coefficient (k) for each species and mesh size was obtained over time. All species showed a rapid decomposition rate at the beginning of the experiment, followed by a slower but steady rate of decomposition over time. The rate of leaf litter decomposition was highest in A. schaueriana, intermediate in L. racemosa and lowest in R. mangle. The difference was mainly linked to the activity and abundance of detritivores, together with the different litter quality of the species, which determined their palatability and probably influenced the decomposition process.

Huvadhoo Atoll is a little-known and generally uncontaminated atoll of the southern Maldives, although the human pressure is increasing. This study represents the first attempt to characterize the meiofaunal and nematode assemblages of its lagoon both from a taxonomic and functional point of view. The nematode assemblage was made up of a total of 131 genera in 33 families. Desmodoridae, Chromadoridae and Xyalidae represented the richest and most abundant families, followed in terms of abundance by Selachinematidae and Comesomatidae. The nematode richness was overall higher than that reported in the previous studies carried out in the Central part of the archipelago. The diversity patterns revealed higher values than those reported for the back-reefs platforms, so confirming the positive influence of the water depth on the biodiversity of the nematode assemblage. The statistical analysis highlighted a significant taxonomic difference of the assemblages between the stations characterized by fine and medium-coarse sands, respectively, in line with the auto-ecological preferences of the taxa detected. The use of some nematode descriptors for assessing the ecological quality status (EQS) of the lagoon has revealed a slight disturbance in the station close to Viligili, one of the most urbanized islands. However, the summarization of all the descriptors used allows the highlighting of the good EQS of the Huvadhoo lagoon. Thus, the results of this study may be taken as the starting point for the future monitoring of the potential and real impact of the anthropogenic activity on the area over time.

A new species of scale worm, Pholoides brasiliensis sp. nov., belonging to the family Sigalionidae, has been found in Espírito Santo, Rio de Janeiro and São Paulo States, south-east Brazil. The new species is mainly characterized by a long papilla in the subdistal region of the neuropodia and a prominent papilla on the ventral side of the tentaculophore. Pholoides remains species-poor compared to most Sigalionidae genera, and currently comprises four species.

Studies on the phenology of harbour seal moult have been carried out in the Atlantic and Pacific, however there has been no research into this process in the Republic of Ireland, at the southern edge of the species range in the north-east Atlantic. Population estimates of harbour seals are derived by counts primarily during the moulting seasons. In the absence of information on the moult phenology planning the optimal timing of such surveys is impossible. Furthermore, changes in moult phenology may reflect changes in resource availability or competition, or demographic changes. The phenology of the harbour seal moult was investigated in south-west Ireland in this study. Timing of the moult differed among all cohorts, yearlings began moulting first followed by adult females and finally adult males. The number of seals hauled out was generally positively related to the proportion of seals in active moult. The timing of the moult period was different to other parts of the species' range and should be considered in determining optimal timing of future surveys for assessing populations abundance and trends in Ireland.

Benthic dinoflagellates collected in spring–summer 2010 and 2011 from intertidal sandy sediments of the shore of Wimereux (north-east English Channel, France) were examined by light microscopy, and some of them by scanning electron microscopy. High dinoflagellate species richness, 70 species, was evidenced when compared to the plankton observed in the coastal waters of the north-east English Channel. The greatest difficulty in performing accurate species identification mainly concerned the heterotrophic species of Amphidinium sensu lato, the laterally flattened species of Amphidiniopsis, as well as some heterotrophic species of Thecadinium. Several undescribed species are here illustrated, mainly within these genera. The differences in size between species of Herdmania and Sabulodinium suggest the occurrence of at least a second species for these monotypic genera. The species Amphidiniopsis hexagona, A. rotundata, A. uroensis and Sinophysis minima are reported for the first time in the Atlantic Ocean and on European coasts. Although these species were only previously known from the Pacific Ocean, they should not necessarily be considered as newcomers or invasive species due to the scarce coverage of the previous studies on sand-dwelling dinoflagellates.

Exposed sandy beaches are widespread coastal habitats with temporal and spatial variability. O Rostro beach (Galicia, north-west Spain) was the most severely affected beach in the ‘Prestige’ oil spill (November 2002). Monitoring sampling was conducted to study macroinfaunal composition and structure after the oil spill episode. The purpose of this survey was to characterize macroinfaunal variations on the beach over a yearly scale (2003–2007) and determine the recovery period. These data are compared with the only available data collected before the spill (1995). Two zones where identified with different recovery trends: (1) supralittoral, occupied either by talitrid amphipods, oniscoidean isopods and insects; and (2) intertidal, where marine crustaceans prevailed. Beach morphodynamics partially buried the oil, which gradually reappeared and was dragged to the coast. Negative ecological effects were observed in the short term (six months after the 2002 spill) but macroinfauna apparently recovered in the following years (2004–2007), showing that macroinfaunal assemblages of this beach are resilient enough to recover after severe stress.

Through application of carbon (C) and nitrogen (N) stable isotope analyses, we investigated the benthic trophic structure of the upper-slope off southern Chile (~45°S) including a recent methane seep area discovered as part of this study. The observed fauna comprised 53 invertebrates and seven fish taxa, including remains of chemosymbiotic fauna (e.g. chemosymbiotic bivalves and siboglinid polychaetes), which are typical of methane seep environments. While in close-proximity to a seep, the heterotrophic fauna had a nutrition derived predominantly from photosynthetic sources (δ13C > –21‰). The absence of chemosynthesis-based nutrition in the consumers was likely a result of using an Agassiz trawl to sample the benthos, a method that is likely to collect a mix of fauna including individuals from adjacent non-seep bathyal environments. While four trophic levels were estimated for invertebrates, the fish assemblage was positioned within the third trophic level of the food web. Differences in corrected standard ellipse area (SEAC), which is a proxy of the isotopic niche width, yielded differences for the demersal fish Notophycis marginata (SEAC = 5.1‰) and Coelorinchus fasciatus (SEAC = 1.1‰), suggesting distinct trophic behaviours. No ontogenic changes were detected in C. fasciatus regarding food sources and trophic position. The present study contributes the first basic trophic data for the bathyal area off southern Chile, including the identification of a new methane seep area, among the furthest south ever discovered. Such information provides the basis for the proper sustainable management of the benthic environments present along the vast Chilean continental margin.

This study investigated the presumed nursery function of mangroves for the ichthyofauna in East African swamp forests, Mida Creek. The species and size composition of the fish fauna and their trophic interactions were studied for five stations. Samples were collected during 5–6 consecutive days close to spring tide in mid-July 2011. Fish were caught using different types of passive fishing gear, such as large and small fyke nets, gill nets and, additionally, beach seines. All individuals were identified to species level, measured and preserved for further analyses. Stomach content analysis was applied to provide information about their diet. Stable isotope analysis was used to detect whether the source of primary production for the higher trophic levels is mangrove-related or not. A total of 27 fish species was recorded in a catch of 938 teleost specimens. Our analyses showed that a majority of fish belonged to the zoobenthivorous/omnivorous trophic mode, since they were partially feeding on invertebrates and on various other food sources. Two species (Sphyraena barracuda and Synodus variegatus) exhibited a mixed diet, with a piscivorous preference. Results concerning the population structure suggested that the fish community of Mida mainly consists of transient species. Juveniles were numerically more abundant in the whole Creek than adults. These findings support the hypothesis of a nursery function of the mangrove forests, Mida Creek.

We examined the benthic macroinfauna at three strata during two seasons (winter and summer) on two sandy beaches (dissipative and reflective) in south-eastern Brazil. The hypothesis raised is that effects of morphodynamics and zonation determine the structure of macroinfauna, with dissipative beaches having comparatively higher species richness and density than the reflective beaches. Flamengo beach (dissipative) had higher species richness but lower density compared to Grumari beach (reflective). A high dissimilarity in assemblage structure (91.75%) was detected between the two beaches. Zonation in the occurrence of macroinfauna was detected for the two beaches in the two examined seasons. At Grumari beach, Emerita brasiliensis occurred mainly in stratum 1 (intertidal swept zone) while Saccocirus sp. occurred in stratum 2 (infralittoral at 0.5 m depth), whereas at Flamengo beach E. brasiliensis and Enoploides sp. had the highest density in stratum 1 (intertidal swept zone) whereas Scolelepis goodbodyi and Donax uncinata dominated in stratum 3 (infralittoral at 1.0 m depth). Scolelepis goodbodyi, Dispio uncinata, Enoploides sp., Nematoda and Trileptium sp. were associated with higher a Dean parameter and content of organic matter at Flamengo beach. In contrast, Hastula sp., Donax sp., Pisionidens indica, Hemipodus californiensis, Saccocirus sp. and Phyllodocidae were associated with the higher wave period and grain size of Grumari beach. The hypothesis that macroinfauna structure differs between the beaches and strata was confirmed, with the dissipative beaches having comparatively higher richness but lower density than the reflective beaches.

This paper reports on the phytoplankton community, its composition, structure and distribution in Changjiang estuary from February 1999 to March 2000. Two hundred and eight species were identified in the dry and flood periods. Diatoms, with 143 species observed, was the most abundant phytoplankton group, accounting for 68.75% of the total phytoplankton species number. Skeletonema costatum was dominant among all the species. The phytoplankton of Changjiang estuary in China was divided into five ecological categories: freshwater species, estuary brackish water species, inshore low salinity species, inshore widespread species and off-sea high salinity species. During the dry period, the major phytoplankton populations in the surface layer were estuary inshore and offshore populations, distinguished from the composition of the bottom layer. The community structure was similar in the two layers during the flood period. The phytoplankton species diversity was calculated for Simpson, Shannon–Weaver diversity and evenness indices, and found to be higher in the dry period, due to the simple dominant species and low spatial heterogeneity in the flood period. Higher phytoplankton abundance was observed in the surface layer during the flood period. The phytoplankton species distribution, coinciding with the dominant species distribution, varied with salinity, and their abundance correlated significantly with nutrients and light.

Epifaunal invertebrates are sensitive to changes in the identity of the dominant host plant, so assessing differences in the structure of epifaunal assemblages is particularly pertinent in areas where seagrasses have been replaced by alternative vegetation (e.g. green seaweeds). In this study, we aimed to compare the diversity, abundance and structure of epifaunal assemblages, particularly amphipods, between meadows dominated by the seagrass Cymodocea nodosa and the green rhizophytic algae Caulerpa prolifera on shallow soft bottoms of Gran Canaria Island, determining whether patterns were temporally consistent between two times. The epifaunal assemblage structure (abundance and composition) consistently differed between both plants, those assemblages associated with C. prolifera-dominated beds being more diverse and abundant relative to C. nodosa meadows. Amphipods constituted ~70% of total crustaceans for the overall study, including 37 species belonging to 16 families. The amphipod abundance was ~3 times larger in C. prolifera-dominated beds than in C. nodosa meadows. We detected species-specific affinities; for example, Microdeutopus stationis, Dexamine spinosa, Aora spinicornis, Ischyrocerus inexpectatus and Apherusa bispinosa were more abundant in C. prolifera-dominated beds; while the caprellid Mantacaprella macaronensis dominated in C. nodosa meadows. However, some species, such as Pseudoprotella phasma and Ampithoe ramondi, were found in both habitats with varying abundances between times.

A floristic study of marine macrophytic algae and Cyanobacteria in the splash and intertidal zones at Luhuitou reef, Sanya Bay, Hainan Island, China, was conducted during the rainy and dry seasons of 2008−2012 utilizing 148 of the most common species. Macrophytic algal diversity increased from the splash zone to the low intertidal zone, while cyanobacterial diversity decreased. In the upper and middle intertidal zones, the dominant species (primarily highly productive ephemerals) changed frequently throughout each year. In the low intertidal zone, the dominant species (mainly annual fleshy, foliose and coriaceous forms) also changed. In the dry season, species numbers were 33% higher than in the rainy season. During the rainy season, Cyanobacteria dominated the splash zone, while green and red algae dominated in increasing numbers from the upper to the low intertidal zones. During the dry season the splash zone was devoid of all macrophytic algae, and only one species of Cyanobacteria survived. In the upper intertidal, Cyanobacteria and red algae prevailed, while in the mid and low zones, red and green algae were the most diverse. In spite of heavy pollution in Sanya Bay, there was no evidence of dramatic changes in species numbers or composition, and the marine flora was similar to that of unpolluted regions in the Indo-Pacific.