Hostname: page-component-76fb5796d-wq484 Total loading time: 0 Render date: 2024-04-25T12:54:40.364Z Has data issue: false hasContentIssue false

Possible role of Prussian blue nanoparticles in chemical evolution: interaction with ribose nucleotides

Published online by Cambridge University Press:  01 October 2015

Rachana Sharma
Affiliation:
Department of Chemistry, Indian Institute of Technology Roorkee, Roorkee-247 667, Uttrakhand, India
Md. Asif Iqubal
Affiliation:
Department of Chemistry, Indian Institute of Technology Roorkee, Roorkee-247 667, Uttrakhand, India
Kamaluddin*
Affiliation:
Department of Chemistry, Indian Institute of Technology Roorkee, Roorkee-247 667, Uttrakhand, India

Abstract

Ribonucleotides (RMPs) are the building blocks of genetic material consisting of a sugar group, a phosphate group and a nucleobase. Prussian blue (PB) is an ancient compound which is supposed to have formed under the conditions of primitive Earth. The interaction between nucleotides and mineral surfaces is of primary importance in the context of prebiotic chemistry. In the present work, the adsorption of RMPs on PB has been studied in the concentration range 0.4 × 10−4–3.0 × 10−4 M of RMPs at pH 7.5, T = 27°C and found to be 53.1, 41.7, 25.8 and 24.0% for adenosine 5′-monophosphate (5′-AMP), guanosine 5′-monophosphate, cytidine 5′-monophosphate and uridine 5′-monophosphate, respectively. Optimum conditions for the adsorption were studied as a function of concentration, time, amount of adsorbent and pH and data obtained were found to fit the Langmuir adsorption isotherm. Langmuir constants (KL and Xm) values were calculated. Fourier transform infrared spectroscopy, Raman spectroscopy, field-emission scanning electron microscopy and X-ray diffractometry techniques were used to investigate the interaction of RMPs on PB surface. Adsorption kinetics of 5′-AMP on PB has been found to be pseudo-second order. Results obtained from this study should prove valuable for a better understanding of the mechanism of RMP–PB interaction.

Type
Research Article
Copyright
Copyright © Cambridge University Press 2015 

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Ali, S.R. & Kamaluddin, (2007). Interaction of ribonucleotides with hexacyanocobaltate(III): a possible role in chemical evolution. Orig. Life Evol. Biosph. 37, 225234.Google Scholar
Ali, S.R., Ahmad, J. & Kamaluddin, (2004). Interaction of ribose nucleotides with metal ferrocyanides and its relevance in chemical evolution. Colloids Surf. A 236, 165169.Google Scholar
Arora, A.K. & Kamaluddin, (2007). Interaction of ribose nucleotides with zinc oxide and relevance in chemical evolution. Colloids Surf. A: Physicochem. Eng. Asp. 298, 186191.Google Scholar
Arora, A.K. & Kamaluddin, (2009). Role of metal oxides in chemical evolution: interaction of ribose nucleotides with alumina. Astrobiology 9(2), 165171.Google Scholar
Arora, A.K., Tomar, V., Aarti, N., Venkateswararao, K.T. & Kamaluddin, (2007). Haematite-water system on Mars and its possible role in chemical evolution. Int. J. Astrobiol. 6, 267271.Google Scholar
Arrhenius, T., Arrhenius, G. & Paplawsky, W. (1994). Archean geochemistry of formaldehyde and cyanogen and the oligomerozation of cyanohydrin. Orig. Life Evol. Biosph. 24, 117.Google Scholar
Barrett, E.P., Joyner, L.G. & Halenda, P.P. (1951). The determination of pore volume and area distributions in porous substances. I. Computations from nitrogen isotherms. J. Am. Chem. Soc. 73(1), 373380.CrossRefGoogle Scholar
Bau, J.P.T. et al. (2012). Adsorption of adenine and thymine on Zeolites: FT-IR and EPR spectroscopy and X-ray diffractometry and SEM studies. Orig. Life Evol. Biosph. 42, 1929.Google Scholar
Bermejo, M.R., Menor-Salvan, C., Osuna-Esteban, S. & Veintemillas-Verdaguer, S. (2007). The effects of ferrous and other ions on the abiotic formation of biomolecules using aqueous aerosols and spark discharges. Orig. Life Evol. Biosph. 37, 50521.Google Scholar
Bernal, J.D. (1951). The Physical Basis of Life. Routledge and Kegan Paul, London.Google Scholar
Brunauer, S., Emmett, P.H. & Teller, E. (1938). Adsorption of gases in multimolecular layers. J. Am. Chem. Soc. 60(2), 309319.Google Scholar
Brunauer, S., Deming, L. S., Deming, W. E. & Teller, E. (1940). On a theory of the van der Waals adsorption of gases. J. A. Chem. Soc. 62(7), 17231732.Google Scholar
Cai, P., Huang, Q., Zhang, X. & Chen, H. (2006). Adsorption of DNA on clay minerals and various colloidal particles from an Alfisol. Soil Biol. Biochem. 38, 471476.CrossRefGoogle Scholar
Carneiro, C.E.A., Berndt, G., Souza, T.G.D., Souza, C.M.D.D., Paesano, A., Costa, A.C.S.D., Mauro, E.D., Santana, H.D. & Zaia, D.A.M. (2011). Adsorption of adenine, cytosine, thymine and uracil on sulfide-modified Montmorillonite: FT-IR, Mossbauer and EPR spectroscopy and X-ray diffractometry studies. Orig. Life Evol. Biosph. 41, 453468.Google Scholar
Cleaves, H.J., Jonsson, C.M., Jonsson, C.L., Sverjensky, D.A. & Hazen, R.M. (2010). Adsorption of nucleic acid components on rutile (TiO2) surfaces. Astrobiology 10, 311323.Google Scholar
Ferris, J.P. & Hagan, W.J. (1986). The adsorption and reaction of adenine-nucleotides on montmorillonite. Orig. Life Evol. Biosph. 17, 6984.Google Scholar
Ferris, J.P., Ertem, G. & Agarwal, V.K. (1989). The adsorption of nucleotides and polynucleotides on montmorillonite clay. Orig. Life Evol. Biosph. 19, 153164.Google Scholar
Feuillie, C., Daniel, I., Michot, L.J. & Pedreira-Segade, U. (2013). Adsorption of nucleotides onto Fe–Mg–Al rich swelling clays. Geochim. Cosmochim. Acta 120, 97108.Google Scholar
Franchi, M., Bramanti, E., Bonzi, L.M., Orioli, P.L., Vettori, C. & Gallori, E. (1999). Clay-nucleic acid complexes: characteristics and implications for the preservation of genetic material in primeval habitats. Orig. Life Evol. Biosph. 29, 297315.Google Scholar
Franchi, M., Ferris, J.P. & Gallori, E. (2003). Cations as mediators of the adsorption of nucleic acids on clay surfaces in prebiotic environments. Orig. Life Evol. Biosph. 33, 116.Google Scholar
Georgelin, T., Jaber, M., Onfroy, T., Hargrove, A.A., Costa-Torro, F. & Lambert, J.F. (2013). Inorganic phosphate and nucleotides on silica surfaces: condensation, dismutation, and phosphorylation. J. Phys. Chem. C 117(24), 1257912590.CrossRefGoogle Scholar
Gibson, C.H., Wickramasinghe, N.C. & Schild, R.E. (2010). First life in primordial-planet oceans: the biological big bang. J. Cosmol. 11, 34903499.Google Scholar
Gotoh, A. et al. (2007). Simple synthesis of three primary colour nanoparticles inks of Prussian blue and its analogues. Nanotechnology 18, 355609 (6 pp).Google Scholar
Hashizume, H. & Theng, B.K.G. (2007). Adenine, adenosine, ribose and 5′-AMP adsorption to allophane. Clays Clay Miner. 55, 599605.Google Scholar
Hashizume, H., Van der Gaast, S. & Theng, B.K.G. (2010). Adsorption of adenine, cytosine, uracil, ribose, and phosphate by Mg-exchanged montmorillonite. Clays Clay Miner. 45, 469475.Google Scholar
Herren, F., Fischer, P., Ludi, A. & Hälg, W. (1980). Neutron diffraction study of Prussian blue, Fe4[Fe (CN)6]3.xH2O. Location of water molecules and long-range magnetic order. Inorg. Chem. 19(4), 956959.Google Scholar
Ho, Y.S. & McKay, G. (1998). A comparison of chemisorption kinetic models applied to pollutant removal on various sorbents. Process Saf. Environ. Protect. 76, 332340.Google Scholar
Ho, Y.S. & McKay, G. (2000). The kinetics of sorption of divalent metal ions onto sphagnum moss peat. Water Res. 34, 735742.CrossRefGoogle Scholar
Holm, N.G., Ertem, G. & Ferris, J.P. (1993). The binding and reactions of nucleotides and polynucleotides on iron-oxide hydroxide polymorphs. Orig. Life Evol. Biosph. 23, 195215.Google Scholar
Keefe, A.D. & Miller, S.L. (1996). Was ferrocyanide a prebiotic reagent? Orig. Life Evol. Biosph. 26, 111129.Google Scholar
Kobya, M. (2003). Adsorption, kinetics and equilibrium studies of Cr(VI) by Hazelnut shell activated carbon. Adsorp. Sci. Technol. 22, 5164.Google Scholar
Kumar, A. & Kamaluddin, (2013). Possible role of metal(II) octacyanomolybdate(IV) in chemical evolution: interaction with ribose nucleotides. Orig. Life Evol. Biosph. 43, 117.Google Scholar
Kundu, J., Neumann, O., Janesko, B.G., Zhang, D., Lal, S., Barhoumi, A., Seuseria, G.E. & Halas, N.J. (2009). Adenine and adenosine monophosphate (AMP)−gold binding interactions studied by surface-enhanced Raman and infrared spectroscopies. J. Phys.Chem. C113(32), 1439014397.Google Scholar
Langmuir, I. (1916). The constitution and fundamental properties of solids and liquids. J. Am. Chem. Soc. 38, 22212295.Google Scholar
Lohrmann, R. & Orgel, L.E. (1971). Urea–inorganic phosphate mixtures as prebiotic phosphorylating agents. Science 171(3970), 490494.Google Scholar
Mahmoodi, N.M., Hayati, B., Arami, M. & Lan, C. (2011). Adsorption of textile dyes on Pine Cone from colored waste water: kinetic, equilibrium and thermodynamic studies. Desalination 268, 117125.Google Scholar
Powner, M.W., Gerland, B. & Sutherland, J.D. (2009). Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions. Nature 459, 239242.Google Scholar
Sciascia, L., Liveri, M.L.T. & Merli, M. (2011). Kinetic and equilibrium studies for the adsorption of acid nucleic bases onto K10 montmorillonite. Appl. Clay Sci. 53, 657668.Google Scholar
Szostak, J.W. (2009). Origins of life: systems chemistry on early Earth. Nature 459(7244), 171172.Google Scholar
Tajmir-Riahi, H.A. & Theophanides, T. (1983). Adenosine-5′-monophosphate complexes of Pt (II) and Mg (II) metal ions. Synthesis, FT-IR spectra and structural studies. Inorg. Chim. Acta 80, 183190.CrossRefGoogle Scholar
Wu, C.H. (2007). Adsorption of reactive dye onto carbon nanotubes: equilibrium, kinetics and thermodynamics. J. Hazard Mater. 144, 93100.Google Scholar
Yamagata, Y., Watanabe, H., Saitoh, M. & Namba, T. (1991). Volcanic production of polyphosphates and its relevance to prebiotic evolution. Nature 352, 516519.Google Scholar
Supplementary material: File

Sharma supplementary material S1

Sharma supplementary material

Download Sharma supplementary material S1(File)
File 8.1 MB